| Lab/sample ID | demonstration_2 | Date,Time | 29/01/2026, 16:42 |
|---|---|---|---|
| Workflow version | 3.8.3 | Barcode | 11 |
| Sample Type | other | Sample Class | positive_control |
| MinKNOW Sample | GSTT_control_sample_01 | Time Interval | 24.0 hrs |
| MinKNOW experiment | GSTT_control_sample_01 | Notes | This is an example |
| SSD Label | Southampton Q-line | Database version | CIDR_v16 |
| Total microbial reads | 11679 | Total reads | 11821 | Total human reads (count/percent of total reads) | 7/0% |
|---|---|---|---|---|---|
| Total bases | 36.45 Mb | Mean read length | 3085 | Mean read quality | 13 |
| Internal control (TMV) | NA/NA | Negative Control | Pass Fail | Unclassified/Below Threshold | 28 / 457 |
| Organism | Counts | Percentage | Auto query |
|---|---|---|---|
| Bordetella parapertussis | 2371 | 40.04 | True;100.00%:Bordetella parapertussis;0.00%:;3152.88;94.50;automated_queries/Bordetella_parapertussis/organism_report.html |
| Mycoplasmoides pneumoniae | 2226 | 37.60 | True;100.00%:Mycoplasmoides pneumoniae;0.00%:;2696.72;95.20;automated_queries/Mycoplasmoides_pneumoniae/organism_report.html |
| Bordetella pertussis | 1194 | 20.17 | True;96.00%:Bordetella pertussis;4.00%:Bordetella bronchiseptica;2817.72;94.25;automated_queries/Bordetella_pertussis/organism_report.html |
| Bordetella bronchiseptica | 118 | 1.99 | False;64.00%:Bordetella parapertussis;36.00%:Bordetella pertussis;2406.68;93.53;automated_queries/Bordetella_bronchiseptica/organism_report.html |
| Chlamydia pneumoniae | 1 | 0.02 | True;100.00%:Chlamydia pneumoniae TW-183;0.00%:;1594.00;94.04;automated_queries/Chlamydia_pneumoniae/organism_report.html |
| Organism | Counts |
|---|---|
| Human adenovirus B - HAdV-B (Human mastadenovirus B) | 4657 |
| Human adenovirus C - HAdV-C (Human mastadenovirus C) | 1068 |
| Human adenovirus A - HAdV-A (Human mastadenovirus A) | 22 |
| Human parainfluenza virus 2 - HPIV-2 (Orthorubulavirus hominis) | 7 |
| Human parainfluenza virus 1 - HPIV-1 (Respirovirus pneumoniae) | 2 |
| Human parainfluenza virus 3 - HPIV-3 (Respirovirus laryngotracheitidis) | 1 |
| Human metapneumovirus - HMPV (Metapneumovirus hominis) | 1 |
| Species | Gene | Hits |
|---|---|---|
| No genes above threshold | NA | NA |
| Organism | Counts | Percentage | Auto query |
|---|---|---|---|
| Bordetella parapertussis | 2371 | 40.04 | True;100.00%:Bordetella parapertussis;0.00%:;3152.88;94.50;automated_queries/Bordetella_parapertussis/organism_report.html |
| Mycoplasmoides pneumoniae | 2226 | 37.60 | True;100.00%:Mycoplasmoides pneumoniae;0.00%:;2696.72;95.20;automated_queries/Mycoplasmoides_pneumoniae/organism_report.html |
| Bordetella pertussis | 1194 | 20.17 | True;96.00%:Bordetella pertussis;4.00%:Bordetella bronchiseptica;2817.72;94.25;automated_queries/Bordetella_pertussis/organism_report.html |
| Bordetella bronchiseptica | 118 | 1.99 | False;64.00%:Bordetella parapertussis;36.00%:Bordetella pertussis;2406.68;93.53;automated_queries/Bordetella_bronchiseptica/organism_report.html |
| Cutibacterium acnes | 6 | 0.10 | excluded_by_threshold |
| Psychrobacter cryohalolentis | 2 | 0.03 | excluded_by_threshold |
| Pseudomonas fluorescens | 1 | 0.02 | excluded_by_threshold |
| Yersinia enterocolitica | 1 | 0.02 | excluded_by_threshold |
| Chlamydia pneumoniae | 1 | 0.02 | True;100.00%:Chlamydia pneumoniae TW-183;0.00%:;1594.00;94.04;automated_queries/Chlamydia_pneumoniae/organism_report.html |
| Serratia liquefaciens | 1 | 0.02 | excluded_by_threshold |